文献类型：期刊文献

英文题名：Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing

作者：Xu, Yang[1] Liu, Cui-Yu[1] Cheng, Wen-Qiang[1] Wu, Kai-Yun[1] Gong, Bang-Chu[1]

第一作者：徐阳

通信作者：Gong, BC[1]

机构：[1]Chinese Acad Forestry, Res Inst Subtrop Forestry, 76 Daqiao Rd, Hangzhou, Peoples R China

年份：2023

卷号：24

期号：1

外文期刊名：BMC GENOMIC DATA

收录：;WOS:【SCI-EXPANDED(收录号:WOS:000948449700001)】；

基金：The study was financially supported by the National Key R & D Program of China (2018YFD1000606) and (2019YFD1000600) and Key Agricultural New Varieties Breeding Projects funded by the Zhejiang Province Science and Technology Department (2021C02066-10). The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.

语种：英文

外文关键词：Diospyros oleifera; Fruit development; Nanopore sequencing; Full-length transcriptome

摘要：Objectives Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit development. Data description We applied Oxford Nanopore Technologies to six developmental stage of fruit from D. oleifera for use in transcriptome sequencing. As a result of full-length transcriptome sequencing, 55.87 Gb of clean data were generated. After mapping onto the reference genome of D. oleifera, 51,588 full-length collapsing transcripts, including 2,727 new gene loci and 43,223 transcripts, were obtained. Comprehensively annotated, 38,086 of new transcripts were functional annotation, and 972 lncRNAs, 7,159 AS events were predicted. Here, we released the transcriptome database of D. oleifera at different stage of fruit development,which will provide a fundamention of to investigatethe transcript structure, variants and evolution of persimmon.