文献类型：期刊文献

英文题名：A class-wide phylogenetic assessment of Dothideomycetes

作者：Schoch C.L. Crous P.W. Groenewald J.Z. Boehm E.W.A. Burgess T.I. de Gruyter J. de Hoog G.S. Dixon L.J. Grube M. Gueidan C. Harada Y. Hatakeyama S. Hirayama K. Hosoya T. Huhndorf S.M. Hyde K.D. Jones E.B.G. Kohlmeyer J. Kruys ?. Li Y.M. Lücking R. Lumbsch H.T. Marvanová L. Mbatchou J.S. McVay A.H. Miller A.N. Mugambi G.K. Muggia L. Nelsen M.P. Nelson P. Owensby C.A. Phillips A.J.L. Phongpaichit S. Pointing S.B. Pujade-Renaud V. Raja H.A. Plata E.R. Robbertse B. Ruibal C. Sakayaroj J. Sano T. Selbmann L. Shearer C.A. Shirouzu T. Slippers B. Suetrong S. Tanaka K. Volkmann-Kohlmeyer B. Wingfield M.J. Wood A.R. Woudenberg J.H.C. Yonezawa H. Zhang Y. Spatafora J.W.

机构：[1]National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, MSC 6510, Bethesda, MD 20892-6510, 45 Center Drive, United States;[2]CBS-KNAW Fungal Biodiversity Centre, 3508 AD Utrecht, P.O. Box 85167, Netherlands;[3]Department of Biological Sciences, Kean University, NJ 07083, 1000 Morris Ave., Union, United States;[4]Biological Sciences, Murdoch University, Murdoch, 6150, Australia;[5]Plant Protection Service, 6700 HC Wageningen, P.O. Box 9102, Netherlands;[6]USDA-ARS Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, United States;[7]Institute of Plant Sciences, Karl-Franzens-University of Graz, Austria;[8]Faculty of Agriculture and Life Sciences, Hirosaki University, Hirosaki, Aomori 036-8561, Bunkyo-cho 3, Japan;[9]National Museum of Nature and Science, Ibaraki 305-0005, Amakubo 4-1-1, Tsukuba, Japan;[10]Department of Botany, The Field Museum, Chicago, IL 60605-2496, 1400 South Lake Shore Drive, United States;[11]School 17 of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand;[12]Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), Khlong Luang, Pathum Thani, 12120, 113 Thailand Science Park, Paholyothin Road, Khlong 1, Thailand;[13]Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, NC 28557, United States;[14]Department of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyv?gen 18D, SE-752 36 Uppsala, Sweden;[15]Czech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Brno CZ-602 00, Tvrdého 14, Czech Republic;[16]College of Liberal Arts and Sciences, DePaul University, Chicago, IL 60604, 1 E. Jackson Street, United States;[17]Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, United States;[18]Illinois Natural History Survey, University of Illinois, Champaign, IL 61820, 1816 South Oak St., United States;[19]National Museums of Kenya, Botany Department, 00100, Nairobi, P.O. Box 45166, Kenya;[20]Committee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, 1025 E. 57th Street, United States;[21]University of Minnesota, Ecology, Evolution, and Behavior, St. Paul, MN 55108, 100 Ecology Building, United States;[22]Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal;[23]Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand;[24]Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, Pokfulam Road, Hong Kong;[25]CIRAD/PIAF, Université Blaise Pascal, Batiment Biologie Végétale Recherche, BP 80026, 63177 Aubière, 24 avenue des Landais, France;[26]Department of Plant Biology, University of Illinois, Urbana, IL 61801, 505 S. Goodwin Ave., United States;[27]Department of Biological Sciences, University of Illinois-Chicago, Chicago, IL 60607, 845 West Taylor Street (MC 066), United States;[28]Departamento de Ingeniería y Ciencia de los Materiales, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (UPM), 28006 Madrid, José Gutiérrez Abascal 2, Spain;[29]DECOS, Università degli Studi della Tuscia, Largo dell'Università, Viterbo, Italy;[30]Fungus/Mushroom Resource and Research Center, Tottori University, Tottori 680-8553, Minami 4-101, Koyama, Tottori, Japan;[31]Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa;[32]ARC-Plant Protection Research Institute, Stellenbosch, 7599, P. Bag X5017, South Africa;[33]International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, China

年份：2009

卷号：64

起止页码：1-15

外文期刊名：Studies in Mycology

收录：Scopus(收录号：2-s2.0-77954765891)

语种：英文

外文关键词：Ascomycota; Dothideomyceta; Fungal evolution; Lichens; Multigene phylogeny; Pezizomycotina; Phylogenomics; Plant pathogens; Saprobes; Tree of life

摘要：We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon. ? 2009 CBS-KNAW Fungal Biodiversity Centre.