文献类型：期刊文献

中文题名：浙江主要白豆杉天然居群遗传多样性和遗传结构差异分析

英文题名：Genetic diversity and genetic structure analysis of principal Pseudotaxus chienii natural populations in Zhejiang Province

作者：曹森[1] 高凯[1] 刘玲娟[2] 方万力[2] 何雪凯[2] 周志春[1]

第一作者：曹森

机构：[1]中国林业科学研究院亚热带林业研究所,全省林木育种重点实验室,浙江杭州311400;[2]钱江源-百山祖国家公园龙泉保护中心,浙江龙泉323714

年份：2025

卷号：49

期号：6

起止页码：115-124

中文期刊名：南京林业大学学报(自然科学版)

外文期刊名：Journal of Nanjing Forestry University:Natural Sciences Edition

收录：;北大核心:【北大核心2023】；

基金：百山祖国家公园科学研究项目(2021ZDLY02)。

语种：中文

中文关键词：白豆杉;天然居群;SSR标记;遗传多样性;遗传结构;浙江省

外文关键词：Pseudotaxus chienii;nature populations;SSR markers;genetic diversity;genetic structure;Zhejiang Province

分类号：S722.5

摘要：【目的】研究白豆杉(Pseudotaxus chienii)天然居群遗传多样性与群体遗传结构,为开展针对国家重点保护植物白豆杉的遗传保育和种群恢复研究提供参考。【方法】选择浙江省凤阳山自然保护区和衢州市天脊龙门山系的6个白豆杉天然居群共133样株为研究材料,通过SSR分子标记技术开展遗传多样性与群体遗传结构差异分析。【结果】6个居群白豆杉的树高和胸径性状均存在显著差异,其中FYS2居群的白豆杉长势最优。用14对多态性良好的SSR位点对133白豆杉样株进行基因分型,共检测到102个等位位点,各位点的有效等位基因数(N_(e))、Shannon's多样性指数(I)和多态信息含量(PIC)平均值分别为4.69、1.61和0.86,各居群的观测杂合度(H_(o))、期望杂合度(H_(e))、近交系数(F_(is))和固定系数(F)平均值分别为0.34、0.73、0.54和0.58,表明白豆杉居群遗传多样性水平较高,但居群内存在中等程度的杂合子缺失,近交现象明显。遗传结构差异分析结果将白豆杉样本分为2个亚群,主坐标系分析和UPGMA聚类分析同样支持这一划分结果。【结论】浙江白豆杉天然居群遗传多样性水平较高,居群间遗传多样性差异显著,分布相近的白豆杉天然居群聚类为同一个亚群,地理变异是白豆杉居群遗传结构差异的主要影响因素。
【Objective】The conservation of plant species with limited distribution and endangered status is a critical concern in biodiversity preservation.Among such species,Pseudotaxus chienii,a nationally protected plant species,has attracted significant attention due to its narrow habitat range and its vulnerability to extinction.As an endemic species primarily found in the mountainous regions of Zhejiang and Jiangxi provinces in China,P.chienii plays an important ecological role in maintaining forest biodiversity and stabilizing the local ecosystem.Unfortunately,over the past few decades,the natural populations of P.chienii have been severely affected by habitat destruction,fragmentation,and anthropogenic pressures,such as overharvesting and deforestation.These factors have contributed to a significant decline in both the population size and genetic diversity of this species.The research also sought to provide a deeper understanding of the evolutionary processes shaping the genetic makeup of P.chienii,especially in light of its restricted geographic range.By examining the genetic variation within and among populations,this study aimed to determine whether there are significant genetic differences that could have implications for long-term species survival.Additionally,the study aimed to investigate the extent of inbreeding and heterozygosity levels within these populations,which are important indicators of the overall fitness and adaptability of the species.The ultimate goal of the research was to generate critical genetic data that would serve as a foundation for future conservation and population restoration efforts,enabling the development of strategies that could enhance the species’genetic diversity and resilience in the wild.【Method】To achieve these objectives,a total of 133 individuals were collected from six natural populations of P.chienii located in different regions of Zhejiang Province(Fengyang Mountain Nature Reserve)and Quzhou City(Tianji Longmen Mountain Range).These populations were chosen for their geographic diversity,allowing for an examination of genetic variation across a range of environmental conditions and altitudes.In order to assess the genetic diversity and population structure of P.chienii,simple sequence repeat(SSR)molecular markers were employed.SSR markers are highly effective in detecting genetic variation and are widely used in plant population genetics studies.A total of 14 SSR primer pairs,known for their high polymorphism and ability to amplify variable loci,were selected for genotyping the 133 individuals.These markers were used to analyze a wide range of genetic parameters,including the number of alleles,the effective number of alleles(N_(e)),the Shannon s diversity index(I),and polymorphic information content(PIC).These parameters are commonly used to assess the level of genetic diversity within populations.Additionally,observed and expected heterozygosity(H_(o) and H_(e))were calculated to evaluate the extent of genetic variation at the individual level,while fixation coefficients(F)and inbreeding coefficients(F_(is))were determined to identify potential inbreeding and genetic drift within the populations.Furthermore,to explore the genetic structure of P.chienii,both principal coordinate analysis(PCoA)and unweighted pair group method with arithmetic mean(UPGMA)clustering were applied.These multivariate statistical methods allowed for the visualization of genetic relationships among individuals and provided insights into the clustering patterns of populations based on genetic similarities.By conducting these analyses,the study aimed to reveal any genetic subgroups within the species and identify the factors that contribute to the observed genetic structure.In summary,this study used advanced molecular techniques to investigate the genetic diversity and structure of P.chienii populations.By analyzing a large number of individuals from multiple natural populations,the study aimed to provide a comprehensive picture of the genetic variation within the species,and to understand the evolutionary and ecological factors that contribute to this variation.【Result】Significant differences were observed in tree height and diameter at breast height among the six populations of P.chienii,with the FYS2 population exhibiting the best growth status.Using 14 pairs of SSR primers with good polymorphism,genotyping of 133 P.chienii individuals identified a total of 102 alleles.The mean values of effective number of alleles(N_(e)),Shannon s diversity index(I),and polymorphic information content(PIC)were 4.69,1.61 and 0.86,respectively.The average values of observed heterozygosity(H_(o)),expected heterozygosity(H_(e)),inbreeding coefficient(F_(is))and fixation coefficient(F)were 0.34,0.73,0.54 and 0.58,respectively.Overall,the results indicated high genetic diversity in P.chienii populations,but there was a moderate level of heterozygote deficiency and obvious inbreeding within populations.Genetic structure analysis divided P.chienii individuals into two subgroups,which was also supported by PCoA and UPGMA clustering analysis.【Conclusion】The natural populations of P.chienii exhibit high levels of genetic diversity,with significant differences in genetic diversity among populations.Proximity-based clustering analysis reveals that geographically adjacent natural populations of P.chienii tend to cluster into the same subgroups,indicating that geographic variation is the primary factor influencing differences in the genetic structure in P.chienii.